ENTR1 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENTR1

Serologically defined colon cancer antigen 3. (277 aa)

Predicted Functional Partners:

CCDC84

0.789

CCP110

0.567

VPS26A

0.545

VPS29

0.540

VPS35

0.473

VPS26B

0.452

SGCE

0.434

ANKRD50

0.423

PKD2

0.411

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD50	ENTR1	ENSLSDP00000021839	ENSLSDP00000004763	Ankyrin repeat domain-containing protein 50.	Serologically defined colon cancer antigen 3.	0.423
ANKRD50	VPS26A	ENSLSDP00000021839	ENSLSDP00000024678	Ankyrin repeat domain-containing protein 50.	Vacuolar protein sorting-associated protein 26A.	0.428
ANKRD50	VPS26B	ENSLSDP00000021839	ENSLSDP00000011399	Ankyrin repeat domain-containing protein 50.	Vacuolar protein sorting-associated protein 26B.	0.523
ANKRD50	VPS29	ENSLSDP00000021839	ENSLSDP00000006390	Ankyrin repeat domain-containing protein 50.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.766
ANKRD50	VPS35	ENSLSDP00000021839	ENSLSDP00000025329	Ankyrin repeat domain-containing protein 50.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.837
CCDC84	CCP110	ENSLSDP00000010399	ENSLSDP00000006251	Coiled-coil domain-containing protein 84.	UPF0505 protein C16orf62.	0.659
CCDC84	ENTR1	ENSLSDP00000010399	ENSLSDP00000004763	Coiled-coil domain-containing protein 84.	Serologically defined colon cancer antigen 3.	0.789
CCDC84	SGCE	ENSLSDP00000010399	ENSLSDP00000025037	Coiled-coil domain-containing protein 84.	Epsilon-sarcoglycan.	0.514
CCP110	CCDC84	ENSLSDP00000006251	ENSLSDP00000010399	UPF0505 protein C16orf62.	Coiled-coil domain-containing protein 84.	0.659
CCP110	ENTR1	ENSLSDP00000006251	ENSLSDP00000004763	UPF0505 protein C16orf62.	Serologically defined colon cancer antigen 3.	0.567
ENTR1	ANKRD50	ENSLSDP00000004763	ENSLSDP00000021839	Serologically defined colon cancer antigen 3.	Ankyrin repeat domain-containing protein 50.	0.423
ENTR1	CCDC84	ENSLSDP00000004763	ENSLSDP00000010399	Serologically defined colon cancer antigen 3.	Coiled-coil domain-containing protein 84.	0.789
ENTR1	CCP110	ENSLSDP00000004763	ENSLSDP00000006251	Serologically defined colon cancer antigen 3.	UPF0505 protein C16orf62.	0.567
ENTR1	PKD2	ENSLSDP00000004763	ENSLSDP00000015816	Serologically defined colon cancer antigen 3.	Polycystin-2.	0.411
ENTR1	SGCE	ENSLSDP00000004763	ENSLSDP00000025037	Serologically defined colon cancer antigen 3.	Epsilon-sarcoglycan.	0.434
ENTR1	VPS26A	ENSLSDP00000004763	ENSLSDP00000024678	Serologically defined colon cancer antigen 3.	Vacuolar protein sorting-associated protein 26A.	0.545
ENTR1	VPS26B	ENSLSDP00000004763	ENSLSDP00000011399	Serologically defined colon cancer antigen 3.	Vacuolar protein sorting-associated protein 26B.	0.452
ENTR1	VPS29	ENSLSDP00000004763	ENSLSDP00000006390	Serologically defined colon cancer antigen 3.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.540
ENTR1	VPS35	ENSLSDP00000004763	ENSLSDP00000025329	Serologically defined colon cancer antigen 3.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.473
PKD2	ENTR1	ENSLSDP00000015816	ENSLSDP00000004763	Polycystin-2.	Serologically defined colon cancer antigen 3.	0.411