Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABCF1ATP-binding cassette sub-family F member 1. (1292 aa)    
Predicted Functional Partners:
EEF1G
Elongation factor 1-gamma.
   
 
 0.784
ABCE1
ATP-binding cassette sub-family E member 1.
   
 
 0.677
EIF2S1
Eukaryotic translation initiation factor 2 subunit 1.
   
 
 0.636
RPS18
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.631
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.630
EIF2S2
Eukaryotic translation initiation factor 2 subunit 2.
   
 
  0.619
RPL18
Large subunit ribosomal protein L18e.
   
 
 0.601
EIF2S3
Eukaryotic translation initiation factor 2 subunit 3.
   
 
 0.581
ABCB7
ATP-binding cassette sub-family B member 7, mitochondrial.
      
 0.568
MTDH
Protein LYRIC.
      
 0.565
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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