Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPLOC4Nuclear protein localization protein 4. (609 aa)    
Predicted Functional Partners:
UFD1
Ubiquitin fusion degradation protein 1.
   
 0.999
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.996
FANCC
Fanconi anemia group C protein homolog; DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May be implicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Upon IFNG induction, may facilitate STAT1 activation by recruiting STAT1 to IFNGR1.
    
 0.995
FANCA
Fanconi anemia group A protein.
    
 0.995
FANCF
FA complementation group F.
    
 0.995
FANCG
Fanconi anemia group G protein.
    
 0.995
FANCB
Fanconi anemia group B protein.
    
 0.994
FANCL
E3 ubiquitin-protein ligase FANCL.
    
 0.992
UBXN7
UBX domain-containing protein 7.
   
 0.979
SVIP
Small VCP/p97-interacting protein.
    
 0.959
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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