RAB33B protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RAB33B

Ras-related protein Rab-33B. (225 aa)

Predicted Functional Partners:

ATG16L1

0.987

ENSLSDP00000016006

0.901

RIC1

0.830

ATG5

0.757

RAB14

0.741

TBC1D25

0.734

RAB33A

0.728

LOC110477969

0.728

RABGGTB

0.720

ATG12

0.713

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG12	ATG16L1	ENSLSDP00000016485	ENSLSDP00000008087	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy-related protein 16-1.	0.999
ATG12	ATG5	ENSLSDP00000016485	ENSLSDP00000006989	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
ATG12	ENSLSDP00000016006	ENSLSDP00000016485	ENSLSDP00000016006	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Ras-related protein Rab-33B.	0.713
ATG12	LOC110477969	ENSLSDP00000016485	ENSLSDP00000004344	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Ras-related protein Rab-33A-like.	0.683
ATG12	RAB33A	ENSLSDP00000016485	ENSLSDP00000002259	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Ras-related protein Rab-33A.	0.683
ATG12	RAB33B	ENSLSDP00000016485	ENSLSDP00000004818	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Ras-related protein Rab-33B.	0.713
ATG16L1	ATG12	ENSLSDP00000008087	ENSLSDP00000016485	Autophagy-related protein 16-1.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
ATG16L1	ATG5	ENSLSDP00000008087	ENSLSDP00000006989	Autophagy-related protein 16-1.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
ATG16L1	ENSLSDP00000016006	ENSLSDP00000008087	ENSLSDP00000016006	Autophagy-related protein 16-1.	Ras-related protein Rab-33B.	0.987
ATG16L1	LOC110477969	ENSLSDP00000008087	ENSLSDP00000004344	Autophagy-related protein 16-1.	Ras-related protein Rab-33A-like.	0.838
ATG16L1	RAB33A	ENSLSDP00000008087	ENSLSDP00000002259	Autophagy-related protein 16-1.	Ras-related protein Rab-33A.	0.838
ATG16L1	RAB33B	ENSLSDP00000008087	ENSLSDP00000004818	Autophagy-related protein 16-1.	Ras-related protein Rab-33B.	0.987
ATG5	ATG12	ENSLSDP00000006989	ENSLSDP00000016485	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
ATG5	ATG16L1	ENSLSDP00000006989	ENSLSDP00000008087	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy-related protein 16-1.	0.999
ATG5	ENSLSDP00000016006	ENSLSDP00000006989	ENSLSDP00000016006	Autophagy protein 5; Involved in autophagic vesicle formation.	Ras-related protein Rab-33B.	0.757
ATG5	LOC110477969	ENSLSDP00000006989	ENSLSDP00000004344	Autophagy protein 5; Involved in autophagic vesicle formation.	Ras-related protein Rab-33A-like.	0.657
ATG5	RAB33A	ENSLSDP00000006989	ENSLSDP00000002259	Autophagy protein 5; Involved in autophagic vesicle formation.	Ras-related protein Rab-33A.	0.657
ATG5	RAB33B	ENSLSDP00000006989	ENSLSDP00000004818	Autophagy protein 5; Involved in autophagic vesicle formation.	Ras-related protein Rab-33B.	0.757
ENSLSDP00000016006	ATG12	ENSLSDP00000016006	ENSLSDP00000016485	Ras-related protein Rab-33B.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.713
ENSLSDP00000016006	ATG16L1	ENSLSDP00000016006	ENSLSDP00000008087	Ras-related protein Rab-33B.	Autophagy-related protein 16-1.	0.987