Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPTNOptineurin. (555 aa)    
Predicted Functional Partners:
TBK1
Serine/threonine-protein kinase TBK1.
   
 0.989
SQSTM1
Sequestosome-1.
    
 0.978
GABARAPL2
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.973
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
  0.970
MAP1LC3A
Microtubule-associated proteins 1A/1B light chain 3A.
   
 0.970
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.970
NBR1
Next to BRCA1 gene 1 protein.
    
 0.962
TAX1BP1
Tax1-binding protein 1.
   
 0.961
GABARAP
Gamma-aminobutyric acid receptor-associated protein.
   
 0.954
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.954
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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