Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000004841annotation not available (205 aa)    
Predicted Functional Partners:
TNNC1
Troponin C, slow skeletal and cardiac muscles.
   
 0.995
TPM4
Tropomyosin alpha-1 chain; Belongs to the tropomyosin family.
   
 0.969
TPM1
Tropomyosin alpha-1 chain isoform X1.
   
 0.969
TPM2
Tropomyosin beta chain; Belongs to the tropomyosin family.
   
 0.969
TPM3
Tropomyosin alpha-3 chain; Belongs to the tropomyosin family.
   
 0.969
PRKACB
cAMP-dependent protein kinase catalytic subunit beta; Belongs to the protein kinase superfamily.
    
 0.965
ACTC1
Actin, alpha cardiac muscle 1.
   
 0.940
TNNC2
Troponin C, skeletal muscle.
   
 0.925
MYL1
Myosin light chain 1, skeletal muscle isoform.
   
 0.912
PPP2R2D
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.905
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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