Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PHYHPhytanoyl-CoA dioxygenase, peroxisomal. (359 aa)    
Predicted Functional Partners:
PEX7
Peroxisomal targeting signal 2 receptor.
    
 0.938
PEX5
Peroxisomal targeting signal 1 receptor.
     
 0.796
TYSND1
Peroxisomal leader peptide-processing protease.
     
 0.792
PEX14
Peroxisomal membrane protein PEX14.
     
 0.761
AGPS
Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.
   
 0.736
PEX12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.720
PHYHIP
Phytanoyl-CoA hydroxylase-interacting protein.
    
 
 0.705
WDR6
WD repeat-containing protein 6.
      
 0.689
ACADL
Long-chain specific acyl-CoA dehydrogenase, mitochondrial.
   
  
 0.683
TATDN3
Putative deoxyribonuclease TATDN3.
      
 0.659
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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