STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL2A1Collagen alpha-1(II) chain. (1474 aa)    
Predicted Functional Partners:
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.923
ITGA1
Integrin alpha-1; Belongs to the integrin alpha chain family.
    
 0.922
ITGA2
Integrin alpha-2; Belongs to the integrin alpha chain family.
   
 0.916
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.913
ITGB8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
ITGAV
Integrin alpha-V; Belongs to the integrin alpha chain family.
   
 0.912
ITGA9
Integrin alpha-9; Belongs to the integrin alpha chain family.
    
 0.908
SDC4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.900
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.724
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.709
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.