STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF18Pre-mRNA-splicing factor 18. (351 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5-like protein.
   
 
 0.982
CDC40
Pre-mRNA-processing factor 17.
   
 0.967
ENSLSDP00000008292
annotation not available
  
 0.964
SLU7
Pre-mRNA-splicing factor SLU7.
  
 0.963
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.937
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 0.931
CWC25
Pre-mRNA-splicing factor CWC25.
    
 0.927
YJU2
Coiled-coil domain-containing protein 94.
    
 0.927
SNRNP200
U5 small nuclear ribonucleoprotein helicase.
    
 
 0.923
ENSLSDP00000010709
annotation not available
    
 
 0.923
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.