PEX11G protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEX11G

Peroxisomal membrane protein 11C. (232 aa)

Predicted Functional Partners:

PEX11B

0.939

PEX11A

0.939

PEX19

0.925

PEX13

0.889

PEX12

0.860

PEX14

0.787

PEX3

0.758

PEX16

0.733

ABCD2

0.710

SLC25A17

0.686

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD2	PEX11A	ENSLSDP00000019232	ENSLSDP00000024629	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 11A.	0.737
ABCD2	PEX11B	ENSLSDP00000019232	ENSLSDP00000003541	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 11B.	0.737
ABCD2	PEX11G	ENSLSDP00000019232	ENSLSDP00000004925	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 11C.	0.710
ABCD2	PEX12	ENSLSDP00000019232	ENSLSDP00000016658	ATP-binding cassette sub-family D member 2.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.771
ABCD2	PEX13	ENSLSDP00000019232	ENSLSDP00000011864	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX13.	0.843
ABCD2	PEX14	ENSLSDP00000019232	ENSLSDP00000006598	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX14.	0.776
ABCD2	PEX16	ENSLSDP00000019232	ENSLSDP00000024090	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX16.	0.736
ABCD2	PEX19	ENSLSDP00000019232	ENSLSDP00000016628	ATP-binding cassette sub-family D member 2.	Peroxisomal biogenesis factor 19.	0.920
ABCD2	PEX3	ENSLSDP00000019232	ENSLSDP00000014024	ATP-binding cassette sub-family D member 2.	Peroxisomal biogenesis factor 3.	0.789
ABCD2	SLC25A17	ENSLSDP00000019232	ENSLSDP00000003419	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.766
PEX11A	ABCD2	ENSLSDP00000024629	ENSLSDP00000019232	Peroxisomal membrane protein 11A.	ATP-binding cassette sub-family D member 2.	0.737
PEX11A	PEX11B	ENSLSDP00000024629	ENSLSDP00000003541	Peroxisomal membrane protein 11A.	Peroxisomal membrane protein 11B.	0.904
PEX11A	PEX11G	ENSLSDP00000024629	ENSLSDP00000004925	Peroxisomal membrane protein 11A.	Peroxisomal membrane protein 11C.	0.939
PEX11A	PEX12	ENSLSDP00000024629	ENSLSDP00000016658	Peroxisomal membrane protein 11A.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.846
PEX11A	PEX13	ENSLSDP00000024629	ENSLSDP00000011864	Peroxisomal membrane protein 11A.	Peroxisomal membrane protein PEX13.	0.888
PEX11A	PEX14	ENSLSDP00000024629	ENSLSDP00000006598	Peroxisomal membrane protein 11A.	Peroxisomal membrane protein PEX14.	0.892
PEX11A	PEX16	ENSLSDP00000024629	ENSLSDP00000024090	Peroxisomal membrane protein 11A.	Peroxisomal membrane protein PEX16.	0.788
PEX11A	PEX19	ENSLSDP00000024629	ENSLSDP00000016628	Peroxisomal membrane protein 11A.	Peroxisomal biogenesis factor 19.	0.951
PEX11A	PEX3	ENSLSDP00000024629	ENSLSDP00000014024	Peroxisomal membrane protein 11A.	Peroxisomal biogenesis factor 3.	0.830
PEX11A	SLC25A17	ENSLSDP00000024629	ENSLSDP00000003419	Peroxisomal membrane protein 11A.	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.700