STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110476678Syntaxin-1B; Belongs to the syntaxin family. (281 aa)    
Predicted Functional Partners:
VAMP4
Vesicle-associated membrane protein 4.
    
 0.972
RIMS2
Regulating synaptic membrane exocytosis protein 2.
     
 0.953
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.933
VAMP3
Vesicle-associated membrane protein 3.
    
 0.928
ENSLSDP00000003905
Vesicle-associated membrane protein 2-like.
   
 0.899
LOC110482477
Vesicle-associated membrane protein 2.
   
 0.899
VAMP1
Synaptobrevin.
   
 0.899
LOC110484829
Vesicle-associated membrane protein 1.
    
 0.865
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.860
STXBP1
Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.859
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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