Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC110476678Syntaxin-1B; Belongs to the syntaxin family. (281 aa)    
Predicted Functional Partners:
VAMP4
Vesicle-associated membrane protein 4.
    
 0.968
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.964
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.951
VAMP3
Vesicle-associated membrane protein 3.
    
 0.939
VAMP7
Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
    
 0.921
ENSLSDP00000003905
Vesicle-associated membrane protein 2-like.
   
 0.903
LOC110482477
Vesicle-associated membrane protein 2.
   
 0.903
VAMP1
Synaptobrevin.
   
 0.903
STXBP1
Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.891
STX5
Syntaxin-5.
    
 0.876
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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