STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUDPPseudouridine-5'-phosphatase. (189 aa)    
Predicted Functional Partners:
PGGHG
Acid trehalase-like protein 1.
  
 
 0.956
AGXT
Serine--pyruvate aminotransferase.
    
 0.946
GPI
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.934
YIPF6
Protein YIPF.
    
 0.897
MPI
Mannose-6-phosphate isomerase.
   
 0.890
PYGL
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.889
PYGB
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.889
GALT
Galactose-1-phosphate uridylyltransferase.
    
 0.853
YRDC
YrdC domain-containing protein, mitochondrial.
  
 
  0.849
ADHFE1
Hydroxyacid-oxoacid transhydrogenase, mitochondrial.
    
 0.846
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.