Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
PUDPPseudouridine-5'-phosphatase. (189 aa)    
Predicted Functional Partners:
PGGHG
Acid trehalase-like protein 1.
  
 
 0.874
GPI
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.856
PNPLA4
Patatin-like phospholipase domain-containing protein 4.
      
 0.854
AGXT
Serine--pyruvate aminotransferase.
    
 0.852
PGM3
Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.
   
 0.837
YIPF6
Protein YIPF.
    
 0.806
GALT
Galactose-1-phosphate uridylyltransferase.
    
 0.798
MXRA5
Matrix-remodeling-associated protein 5.
      
 0.797
ADHFE1
Hydroxyacid-oxoacid transhydrogenase, mitochondrial.
    
 0.784
YRDC
YrdC domain-containing protein, mitochondrial.
    
  0.772
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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