STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GATA6Transcription factor GATA-6. (517 aa)    
Predicted Functional Partners:
ZFPM2
Zinc finger protein ZFPM2.
    
 0.783
NKX2-5
Homeobox protein Nkx-2.5.
   
 0.773
LMCD1
LIM and cysteine-rich domains protein 1.
    
 0.743
ZFPM1
Zinc finger protein ZFPM1.
   
 0.665
SOX7
Transcription factor SOX-7.
    
 0.623
LMO2
Rhombotin-2.
    
 0.611
LOC110468826
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.608
YES1
Tyrosine-protein kinase.
   
 
 0.590
TAL1
T-cell acute lymphocytic leukemia protein 1.
   
 0.587
NFYB
Nuclear transcription factor Y subunit beta.
    
 
 0.563
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.