Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM109Transmembrane protein 109. (228 aa)    
Predicted Functional Partners:
TMEM41A
Transmembrane protein 41A.
      
 0.873
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
    
 0.845
GMPS
GMP synthase [glutamine-hydrolyzing].
  
 
  0.818
L3HYPDH
Trans-3-hydroxy-L-proline dehydratase.
    
 0.801
PPAT
Amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
 
  0.789
FADS6
Fatty acid desaturase 6.
    
 0.775
FDXR
NADPH:adrenodoxin oxidoreductase, mitochondrial.
    
 0.775
IAH1
Isoamyl acetate-hydrolyzing esterase 1.
    
 0.770
LOC110473577
Transmembrane protein 126A.
      
 0.765
FH
Fumarate hydratase, mitochondrial.
     
  0.759
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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