STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPN21Tyrosine-protein phosphatase non-receptor type 21. (1219 aa)    
Predicted Functional Partners:
RHPN1
Rhophilin-1.
    
 0.846
PARD6B
Partitioning defective 6 beta.
    
 
 0.730
PARD6G
Partitioning defective 6 gamma.
    
 
 0.730
PTS
6-pyruvoyltetrahydropterin synthase.
    
 
 0.642
CCK
Cholecystokinin.
     
  0.613
HOOK3
Protein Hook 3.
    
 0.578
MTSS1
Metastasis suppressor protein 1.
    
 0.542
FBXO42
F-box only protein 42.
      
 0.540
RHPN2_1
Rhophilin-2.
    
 0.530
RHPN2
Rhophilin-2.
    
 0.530
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.