STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF13PHD finger protein 13. (306 aa)    
Predicted Functional Partners:
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.733
KANSL3
KAT8 regulatory NSL complex subunit 3.
    
 0.719
TEX30
Testis-expressed sequence 30 protein.
    
 0.719
OGT
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase subunit.
   
 0.560
TBX20
T-box transcription factor TBX20.
    
   0.547
SETD1B
Histone-lysine N-methyltransferase SETD1B.
   
 0.544
KDM6A
Lysine-specific demethylase 6A.
   
 
 0.507
KDM6B
Lysine-specific demethylase 6B.
   
 
 0.507
TBL1XR1
F-box-like/WD repeat-containing protein TBL1XR1.
    
 
 0.480
TBL1X
F-box-like/WD repeat-containing protein TBL1X.
    
 
 0.480
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.