Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC110484950Cytochrome b ascorbate-dependent protein 3. (263 aa)    
Predicted Functional Partners:
TCN2
Transcobalamin 2.
      
 0.594
IPP
Actin-binding protein IPP.
      
 0.568
PPRC1
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1.
      
 0.513
CDYL
Chromodomain Y-like protein.
    
   0.498
CDYL2
Chromodomain Y-like protein 2.
    
   0.498
CIAO2B
Mitotic spindle-associated MMXD complex subunit MIP18.
      
 0.488
GLRX3
Glutaredoxin-3.
      
 0.461
SNX14
Sorting nexin-14.
      
 0.451
GFM1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
      
 0.448
POLR3H
DNA-directed RNA polymerase III subunit RPC8.
      
 0.441
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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