STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TXNL4A-2U5 snRNP protein, DIM1 family. (71 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
    
 0.957
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 0.935
DDX23
Putative ATP-dependent RNA helicase DDX23.
    
 0.931
EFTUD2
U5 small nuclear ribonucleoprotein component.
    
 0.917
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
  0.914
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.905
SNRNP40
U5 small nuclear ribonucleoprotein.
    
 0.903
SNRPF
Small nuclear ribonucleoprotein F.
   
  0.886
ZMAT2
Zinc finger matrin-type protein 2.
    
 0.876
ENSLSDP00000004920
annotation not available
    
 
 0.874
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.