Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THOC1THO complex subunit 1. (664 aa)    
Predicted Functional Partners:
THOC2
THO complex subunit 2.
   
 0.999
THOC7
THO complex subunit 7.
   
 0.999
THOC3
THO complex subunit 3.
    
 0.999
ENSLSDP00000004915
annotation not available
    
 0.998
THOC5
THO complex subunit 5.
   
 0.998
ALYREF
THO complex subunit 4.
    
 0.989
DDX39B
Spliceosome RNA helicase Ddx39b.
   
 0.971
SARNP
SAP domain-containing ribonucleoprotein.
    
 0.966
CHTOP
Chromatin target of PRMT1 protein.
    
 0.952
SRSF1
Serine/arginine-rich splicing factor 1.
   
 0.938
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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