PNPLA7_0 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNPLA7_0

Patatin-like phospholipase domain-containing protein 7. (183 aa)

Predicted Functional Partners:

PRKX

0.736

PRKACB

0.736

AKAP10

0.633

POLR2F

0.465

GLUD1

0.449

TMEM109

0.438

PTS

0.430

OAT

0.429

FADS6

0.429

FDXR

0.429

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP10	PNPLA7_0	ENSLSDP00000012598	ENSLSDP00000005242	A-kinase anchor protein 10, mitochondrial.	Patatin-like phospholipase domain-containing protein 7.	0.633
AKAP10	PRKACB	ENSLSDP00000012598	ENSLSDP00000015996	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase catalytic subunit beta; Belongs to the protein kinase superfamily.	0.712
AKAP10	PRKX	ENSLSDP00000012598	ENSLSDP00000010070	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase catalytic subunit PRKX.	0.712
FADS6	GLUD1	ENSLSDP00000020541	ENSLSDP00000011778	Fatty acid desaturase 6.	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.946
FADS6	PNPLA7_0	ENSLSDP00000020541	ENSLSDP00000005242	Fatty acid desaturase 6.	Patatin-like phospholipase domain-containing protein 7.	0.429
FADS6	TMEM109	ENSLSDP00000020541	ENSLSDP00000005142	Fatty acid desaturase 6.	Transmembrane protein 109.	0.844
FDXR	GLUD1	ENSLSDP00000020730	ENSLSDP00000011778	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.946
FDXR	PNPLA7_0	ENSLSDP00000020730	ENSLSDP00000005242	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Patatin-like phospholipase domain-containing protein 7.	0.429
FDXR	TMEM109	ENSLSDP00000020730	ENSLSDP00000005142	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Transmembrane protein 109.	0.844
GLUD1	FADS6	ENSLSDP00000011778	ENSLSDP00000020541	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Fatty acid desaturase 6.	0.946
GLUD1	FDXR	ENSLSDP00000011778	ENSLSDP00000020730	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.946
GLUD1	OAT	ENSLSDP00000011778	ENSLSDP00000014532	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.955
GLUD1	PNPLA7_0	ENSLSDP00000011778	ENSLSDP00000005242	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Patatin-like phospholipase domain-containing protein 7.	0.449
GLUD1	TMEM109	ENSLSDP00000011778	ENSLSDP00000005142	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Transmembrane protein 109.	0.822
OAT	GLUD1	ENSLSDP00000014532	ENSLSDP00000011778	Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate dehydrogenase 1, mitochondrial; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.955
OAT	PNPLA7_0	ENSLSDP00000014532	ENSLSDP00000005242	Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Patatin-like phospholipase domain-containing protein 7.	0.429
OAT	PRKACB	ENSLSDP00000014532	ENSLSDP00000015996	Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	cAMP-dependent protein kinase catalytic subunit beta; Belongs to the protein kinase superfamily.	0.624
OAT	PRKX	ENSLSDP00000014532	ENSLSDP00000010070	Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	cAMP-dependent protein kinase catalytic subunit PRKX.	0.624
PNPLA7_0	AKAP10	ENSLSDP00000005242	ENSLSDP00000012598	Patatin-like phospholipase domain-containing protein 7.	A-kinase anchor protein 10, mitochondrial.	0.633
PNPLA7_0	FADS6	ENSLSDP00000005242	ENSLSDP00000020541	Patatin-like phospholipase domain-containing protein 7.	Fatty acid desaturase 6.	0.429