Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COLEC12Collectin-12. (742 aa)    
Predicted Functional Partners:
FGD4
FYVE, RhoGEF and PH domain-containing protein 4.
      
 0.524
PCK1
Phosphoenolpyruvate carboxykinase, cytosolic [GTP].
      
 0.513
GRAMD2B
GRAM domain-containing protein 3.
    
   0.449
TNR
Tenascin-R.
   
  0.448
TNC
Tenascin.
   
  0.448
ENSLSDP00000015650
annotation not available
    
  0.447
LOC110477872
Mitochondrial uncoupling protein 3; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.436
CSF1R
Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
   
 
 0.421
MRC2
C-type mannose receptor 2.
     
  0.419
STAB1
Stabilin-1.
   
  
 0.414
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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