RBFA protein (Lonchura striata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

RBFA

Putative ribosome-binding factor A, mitochondrial. (330 aa)

Predicted Functional Partners:

MRPS21

0.865

METTL15

0.864

MRPS7

0.849

MRPS11

0.849

MTIF3

0.777

TFB1M

0.708

MRPS15

0.681

MRPS26

0.680

DAP3

0.680

MRPS23

0.676

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAP3	METTL15	ENSLSDP00000022915	ENSLSDP00000018954	28S ribosomal protein S29, mitochondrial.	Putative methyltransferase-like protein 15.	0.874
DAP3	MRPS11	ENSLSDP00000022915	ENSLSDP00000024825	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	0.997
DAP3	MRPS15	ENSLSDP00000022915	ENSLSDP00000020912	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.997
DAP3	MRPS21	ENSLSDP00000022915	ENSLSDP00000016708	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S21, mitochondrial.	0.991
DAP3	MRPS23	ENSLSDP00000022915	ENSLSDP00000018707	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S23, mitochondrial.	0.984
DAP3	MRPS26	ENSLSDP00000022915	ENSLSDP00000001999	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S26, mitochondrial.	0.983
DAP3	MRPS7	ENSLSDP00000022915	ENSLSDP00000020437	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S7, mitochondrial.	0.998
DAP3	MTIF3	ENSLSDP00000022915	ENSLSDP00000000321	28S ribosomal protein S29, mitochondrial.	Translation initiation factor IF-3, mitochondrial.	0.679
DAP3	RBFA	ENSLSDP00000022915	ENSLSDP00000005292	28S ribosomal protein S29, mitochondrial.	Putative ribosome-binding factor A, mitochondrial.	0.680
DAP3	TFB1M	ENSLSDP00000022915	ENSLSDP00000021897	28S ribosomal protein S29, mitochondrial.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.667
METTL15	DAP3	ENSLSDP00000018954	ENSLSDP00000022915	Putative methyltransferase-like protein 15.	28S ribosomal protein S29, mitochondrial.	0.874
METTL15	MRPS11	ENSLSDP00000018954	ENSLSDP00000024825	Putative methyltransferase-like protein 15.	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	0.780
METTL15	MRPS15	ENSLSDP00000018954	ENSLSDP00000020912	Putative methyltransferase-like protein 15.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.774
METTL15	MRPS21	ENSLSDP00000018954	ENSLSDP00000016708	Putative methyltransferase-like protein 15.	28S ribosomal protein S21, mitochondrial.	0.662
METTL15	MRPS23	ENSLSDP00000018954	ENSLSDP00000018707	Putative methyltransferase-like protein 15.	28S ribosomal protein S23, mitochondrial.	0.651
METTL15	MRPS26	ENSLSDP00000018954	ENSLSDP00000001999	Putative methyltransferase-like protein 15.	28S ribosomal protein S26, mitochondrial.	0.651
METTL15	MRPS7	ENSLSDP00000018954	ENSLSDP00000020437	Putative methyltransferase-like protein 15.	28S ribosomal protein S7, mitochondrial.	0.787
METTL15	RBFA	ENSLSDP00000018954	ENSLSDP00000005292	Putative methyltransferase-like protein 15.	Putative ribosome-binding factor A, mitochondrial.	0.864
METTL15	TFB1M	ENSLSDP00000018954	ENSLSDP00000021897	Putative methyltransferase-like protein 15.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.418
MRPS11	DAP3	ENSLSDP00000024825	ENSLSDP00000022915	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	28S ribosomal protein S29, mitochondrial.	0.997