Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM18Putative RNA-binding protein 18. (190 aa)    
Predicted Functional Partners:
GSN
Gelsolin.
    
   0.752
TMOD3
Tropomodulin-3.
    
   0.717
LOC110474227
Tropomodulin-2.
    
   0.717
SYF2
Pre-mRNA-splicing factor SYF2.
      
 0.577
SUPT7L
STAGA complex 65 subunit gamma.
      
 0.568
DCTN3
Dynactin subunit 3.
      
 0.565
SMDT1
Essential MCU regulator, mitochondrial.
      
 0.560
ZMAT2
Zinc finger matrin-type protein 2.
      
 0.551
UBOX5
RING finger protein 37.
      
 0.540
LOC110477443
E3 ubiquitin-protein ligase NRDP1.
    
 
 0.539
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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