Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THBS4Thrombospondin-4. (987 aa)    
Predicted Functional Partners:
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.955
CD47
Leukocyte surface antigen CD47.
   
 0.939
ITGAV
Integrin alpha-V; Belongs to the integrin alpha chain family.
   
  0.936
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.931
ENSLSDP00000010405
annotation not available
   
  0.928
ITGA3
Integrin alpha-3; Belongs to the integrin alpha chain family.
   
  0.912
CD36
Platelet glycoprotein 4; Belongs to the CD36 family.
    
 0.912
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.907
SDC4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.903
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.806
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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