STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIP13Pachytene checkpoint protein 2; Belongs to the AAA ATPase family. (430 aa)    
Predicted Functional Partners:
MAD2L1BP
MAD2L1-binding protein.
   
 
 0.947
UBXN7
UBX domain-containing protein 7.
   
 0.944
MAD2L1
Mitotic spindle assembly checkpoint protein MAD2A.
   
 
 0.943
MAD2L2
Mitotic spindle assembly checkpoint protein MAD2B.
    
 
 0.905
CDC20
Cell division cycle protein 20.
   
 
 0.876
EXO1
Exonuclease 1.
  
  
 0.823
MELK
Non-specific serine/threonine protein kinase.
   
  
 0.806
DMC1
DNA meiotic recombinase 1.
   
 
 0.788
FZR1
Fizzy-related.
   
 
 0.733
UFD1
Ubiquitin fusion degradation protein 1.
    
 0.711
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.