Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GCHFRGTP cyclohydrolase 1 feedback regulatory protein. (84 aa)    
Predicted Functional Partners:
GCH1
GTP cyclohydrolase 1.
    
 0.996
PTS
6-pyruvoyltetrahydropterin synthase.
     
 0.875
SPR
Uncharacterized protein.
      
 0.699
QDPR
Dihydropteridine reductase.
   
  
 0.682
DNAJC12
DnaJ subfamily C member 12.
      
 0.598
DTYMK
Thymidylate kinase.
      
 0.589
PCBD1
Pterin-4-alpha-carbinolamine dehydratase.
   
  
 0.581
TYRP1
5,6-dihydroxyindole-2-carboxylic acid oxidase.
      
 0.580
UPK3B
Uroplakin-3b.
      
 0.578
MNAT1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
      
 0.577
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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