Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMOD2Leiomodin-1. (542 aa)    
Predicted Functional Partners:
LMOD1
Leiomodin-1.
   
 
 
0.907
LMOD3
Leiomodin-3.
   
 
 
0.905
KLHL40
Kelch-like protein 40.
   
 
 0.692
CSRP3
Cysteine and glycine-rich protein 3.
   
  
 0.638
MYOZ2
Myozenin-2.
   
 
 0.611
FBXW4
F-box/WD repeat-containing protein 4 isoform X1.
      
 0.557
NEB
Nebulin.
   
 0.528
NRAP
Nebulin-related-anchoring protein.
   
 0.520
MYL1
Myosin light chain 1, skeletal muscle isoform.
   
 
 0.517
PFN2
Profilin; Belongs to the profilin family.
   
  
 0.517
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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