STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGGHGAcid trehalase-like protein 1. (700 aa)    
Predicted Functional Partners:
PUDP
Pseudouridine-5'-phosphatase.
  
 
 0.956
GNE
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase.
    
 0.895
GALM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.879
YIPF6
Protein YIPF.
  
 0.725
LOC110479912
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.643
LOC110484220
Alpha-amylase.
  
 
 0.643
ENSLSDP00000006093
annotation not available
  
 
 0.643
ALKBH2
Alpha-ketoglutarate-dependent dioxygenase alkB 2.
  
 
 0.643
SLC3A1
Neutral and basic amino acid transport protein rBAT.
  
 
 0.643
KIAA0513
Uncharacterized protein KIAA0513.
  
 
 0.643
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.