Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LRRC55Leucine-rich repeat-containing protein 55. (310 aa)    
Predicted Functional Partners:
INPP5J
Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A.
      
 0.566
LRRC20
Leucine-rich repeat-containing protein 20.
      
 0.543
IQCA1
IQ motif containing with AAA domain 1.
    
 
 0.504
LRRC30
Leucine-rich repeat-containing protein 30.
   
  
 0.502
TCEANC2
Transcription elongation factor A N-terminal and central domain-containing protein 2.
      
 0.468
TMEM233
Transmembrane protein 233.
    
 0.460
PTPRJ
Receptor-type tyrosine-protein phosphatase eta.
    
 0.454
ASB8
Ankyrin repeat and SOCS box protein 8.
    
 0.446
ITGB1BP2
Cysteine and histidine-rich domain-containing protein 1.
      
 0.438
KCNMB1
Putative calcium-activated potassium channel subunit beta.
     
 0.428
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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