STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110471003Cyclin-dependent kinase 7. (246 aa)    
Predicted Functional Partners:
MNAT1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
   
 0.999
CCNH
Cyclin-H; Belongs to the cyclin family.
    
 0.999
GTF2H3
General transcription factor IIH subunit 3.
   
 0.997
GTF2E2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.993
LOC110482677
TFIIH basal transcription factor complex helicase XPD subunit.
    
 0.990
GTF2H1
General transcription factor IIH subunit 1.
   
 0.987
LOC110475048
General transcription factor IIH subunit.
   
 0.987
ERCC3
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.984
GTF2B
Transcription initiation factor IIB.
   
 0.978
CDK1
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
  
0.973
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.