Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TUT7Terminal uridylyltransferase 7. (1537 aa)    
Predicted Functional Partners:
TUT4
Terminal uridylyltransferase 4.
   
 0.927
LIN28A
Protein lin-28 A.
    
 0.919
DIS3L2
DIS3-like exonuclease 2; Belongs to the RNR ribonuclease family.
   
 
 0.710
PAPOLG
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 
 0.608
RPL3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
   0.607
LIN28B
Protein lin-28 B.
    
 0.555
TENT4B
Non-canonical poly(A) RNA polymerase PAPD5.
      
 0.546
RPL26L1
60S ribosomal protein L26.
    
   0.535
SYMPK
Symplekin.
   
 0.524
PAPOLA
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 
 0.522
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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