Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GAPVD1GTPase-activating protein and VPS9 domain-containing protein 1. (1701 aa)    
Predicted Functional Partners:
YWHAB
14-3-3 protein beta/alpha; Belongs to the 14-3-3 family.
    
 0.858
SNX24
Sorting nexin-24.
    
 
 0.858
CSNK1A1
Casein kinase I isoform alpha; Belongs to the protein kinase superfamily.
    
   0.841
RABEP1
Rab GTPase-binding effector protein 1.
   
 0.839
RAB5C
Ras-related protein Rab-5C.
    
 0.794
RAB17
Ras-related protein Rab-17.
    
 0.794
RAB5A
Ras-related protein Rab-5A.
    
 0.794
ALS2
Alsin.
    
 0.729
SRRM3
Serine/arginine repetitive matrix protein 3.
    
 
 0.729
ANKFY1
Rabankyrin-5.
   
 
 0.728
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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