STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAPK1Death-associated protein kinase 1. (1430 aa)    
Predicted Functional Partners:
DAPK2
Death-associated protein kinase 3.
     
 
0.900
LOC110471576
Death-associated protein kinase 2.
     
 
0.900
ARNTL2
Aryl hydrocarbon receptor nuclear translocator-like protein 2.
    
 
 0.677
TNFRSF25
Tumor necrosis factor receptor superfamily member 25.
    
 
 0.673
DGKZ
Diacylglycerol kinase.
      
 0.672
CALML3
Calmodulin, striated muscle.
   
 0.582
CALM2
Calmodulin; Belongs to the calmodulin family.
   
 0.582
CALM1
Calmodulin 1.
   
 0.582
PDCD6
Programmed cell death protein 6.
   
 
 0.539
LUZP1
Leucine zipper protein 1.
    
 
 0.514
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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