Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LPXNLeupaxin. (373 aa)    
Predicted Functional Partners:
VCL
Vinculin.
   
 0.979
CRK
Adapter molecule crk.
    
 0.894
PARVB
Beta-parvin.
   
 0.862
PARVA
Alpha-parvin.
   
 0.862
PTK2
Focal adhesion kinase 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.857
PTK2B
Protein-tyrosine kinase 2-beta; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.857
BCAR1
Breast cancer anti-estrogen resistance protein 1.
    
 0.839
ILK
Integrin-linked protein kinase.
   
 0.837
CRKL
Crk-like protein.
    
 0.827
PTPN11
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
   
 0.804
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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