STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCTSecretin. (170 aa)    
Predicted Functional Partners:
CDH23
Cadherin-23.
   
 0.944
USH1C
Harmonin.
   
 
 0.653
LHFPL5
Tetraspan membrane protein of hair cell stereocilia.
   
 0.626
LHFPL4
Lipoma HMGIC fusion partner-like 4 protein.
   
 0.626
LHFPL3
Lipoma HMGIC fusion partner-like 3 protein.
   
 0.626
ADCYAP1
Glucagon family neuropeptide.
      
 0.616
MLN
Promotilin.
  
  
 0.591
VIPR2
Vasoactive intestinal polypeptide receptor 2; Belongs to the G-protein coupled receptor 2 family.
    
 0.559
STOX1
Storkhead-box protein 1.
      
 0.519
WHRN
Whirlin.
    
 
 0.511
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.