Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000005656annotation not available (215 aa)    
Predicted Functional Partners:
SF3B4
Splicing factor 3B subunit 4.
   
 0.864
SF3A3
Splicing factor 3A subunit 3.
   
 0.858
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.835
SF3A1
Splicing factor 3A subunit 1.
   
 0.832
SF3B2
Splicing factor 3B subunit 2.
   
 0.826
SF3B1
Splicing factor 3B subunit 1.
   
 0.821
SF3B3
Splicing factor 3B subunit 3.
    
 0.821
PHF5A
PHD finger-like domain-containing protein 5A.
   
 0.813
U2SURP
U2 snRNP-associated SURP motif-containing protein.
    
 0.802
DDX46
Putative ATP-dependent RNA helicase DDX46.
    
 0.801
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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