Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF5Protein YIPF. (254 aa)    
Predicted Functional Partners:
YIF1B
LOW QUALITY PROTEIN: protein YIF1B.
   
 
 0.833
YIPF1
Protein YIPF.
   
 
 0.780
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.757
YIPF3
Protein YIPF3.
   
 
 0.731
IER3IP1
Immediate early response 3-interacting protein 1.
   
 
 0.710
RAB1A
Ras-related protein Rab-1A.
   
 
 0.704
MAEA
Macrophage erythroblast attacher.
   
 
 0.588
ITGB1BP2
Cysteine and histidine-rich domain-containing protein 1.
   
  
 0.575
HHATL
Protein-cysteine N-palmitoyltransferase HHAT-like protein; Belongs to the membrane-bound acyltransferase family.
   
  
 0.540
DERL3
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.539
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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