Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ERI13'-5' exoribonuclease 1. (337 aa)    
Predicted Functional Partners:
SLBP
Histone RNA hairpin-binding protein.
    
 
 0.928
ANO9
Anoctamin.
      
 0.802
DICER1
Endoribonuclease Dicer; Belongs to the helicase family. Dicer subfamily.
    
 
 0.798
NUDCD1
NudC domain-containing protein 1.
    
   0.785
RSL1D1
Ribosomal L1 domain-containing protein 1.
   
  
 0.751
SEPSECS
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis.
      
 0.728
PTPN6
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
      
 0.724
EXOSC5
Exosome complex component RRP46.
    
 0.711
UNC119
Protein unc-119 A.
   
  
 0.710
XRN1
5'-3' exoribonuclease 1.
      
 0.689
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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