Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD21Double-strand-break repair protein rad21. (631 aa)    
Predicted Functional Partners:
SMC3
Structural maintenance of chromosomes protein.
   
 0.957
SMC1A
Structural maintenance of chromosomes protein 1A.
   
 0.945
SMC1B
Structural maintenance of chromosomes protein.
   
 0.945
PDS5A
Sister chromatid cohesion protein PDS5 A.
   
 0.920
PDS5B
Sister chromatid cohesion protein PDS5 B.
   
 0.904
RAD21L1
Double-strand-break repair protein rad21-like protein 1.
  
  
 
0.903
NIPBL
Nipped-B protein.
   
 0.902
WAPL
Wings apart-like.
    
 0.899
STAG2
Cohesin subunit SA-2.
   
 0.884
STAG1
Cohesin subunit SA-1.
   
 0.884
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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