STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAK4Serine/threonine-protein kinase PAK 4. (499 aa)    
Predicted Functional Partners:
CDC42
Cell division control protein 42.
   
 0.984
NCK2
Cytoplasmic protein.
    
 0.966
ARHGEF7
Rho guanine nucleotide exchange factor 7.
    
 0.959
ARHGEF6
Rho guanine nucleotide exchange factor 6.
    
 0.959
RAC3
Ras-related C3 botulinum toxin substrate 3 isoform X1.
   
 0.954
RAC1
Ras-related C3 botulinum toxin substrate 1.
   
 0.954
RAC2
Ras-related C3 botulinum toxin substrate 2.
   
 0.954
ITSN2
Intersectin-2.
    
 0.944
LIMK2
LIM domain kinase 2.
    
0.939
LIMK1
LIM domain kinase 1.
    
0.939
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.