Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPS1228S ribosomal protein S12, mitochondrial; Belongs to the universal ribosomal protein uS12 family. (143 aa)    
Predicted Functional Partners:
MRPS16
28S ribosomal protein S16, mitochondrial.
  
 0.998
MRPS7
28S ribosomal protein S7, mitochondrial.
 
 0.998
MRPS9
28S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 0.998
MRPS11
28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.
  
 0.998
MRPS2
28S ribosomal protein S2, mitochondrial.
  
 0.997
ENSLSDP00000008068
annotation not available
   
 0.997
MRPS5
28S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family.
  
 0.997
RPS18
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 0.997
MRPS14
28S ribosomal protein S14, mitochondrial.
  
 0.997
MRPS15
28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
  
 0.997
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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