Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTBP1Latent-transforming growth factor beta-binding protein 1. (1691 aa)    
Predicted Functional Partners:
TGFB2
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.968
THBS1
Thrombospondin-1.
   
 
 0.944
TGFB3
Transforming growth factor beta-3.
    
 0.928
ENSLSDP00000008873
Transforming growth factor beta-1 proprotein-like.
    
  0.904
COL6A2
Collagen type VI alpha 2 chain.
   
 0.613
FKBP10
Peptidylprolyl isomerase.
   
 0.590
TIMP2
Metalloproteinase inhibitor 2.
     
 0.589
PRRX1
Paired mesoderm homeobox protein 1.
    
 0.583
PRRX2
Paired mesoderm homeobox protein 2.
    
 0.582
TIMP3
Metalloproteinase inhibitor 3.
     
 0.570
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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