STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYBUSyntabulin. (656 aa)    
Predicted Functional Partners:
UNC79
Protein unc-79.
    
 0.777
LOC110478774
E3 SUMO-protein ligase RanBP2.
    
 0.626
MFF
Mitochondrial fission factor.
    
 0.566
VRTN
Vertnin.
     
 0.528
VAMP7
Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
     
 0.517
SYT1
Synaptotagmin-1.
   
  
 0.516
GRIP1
Glutamate receptor-interacting protein 1.
    
 0.468
BSN
Protein bassoon.
     
 0.468
TXLNB
Beta-taxilin.
      
 0.457
KDM6A
Lysine-specific demethylase 6A.
    
 0.456
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.