Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCFL5Transcription factor-like 5 protein. (525 aa)    
Predicted Functional Partners:
NRF1
Nuclear respiratory factor 1.
      
 0.581
EMSY
Protein EMSY.
      
 0.565
METTL22
Methyltransferase-like protein 22.
      
 0.547
BRICD5
BRICHOS domain-containing protein 5.
      
 0.536
CNKSR3
Connector enhancer of kinase suppressor of ras 3.
      
 0.526
ZNF488
Zinc finger protein 488.
      
 0.523
PRDM8
PR domain zinc finger protein 8.
      
 0.523
ABTB2
Ankyrin repeat and BTB/POZ domain-containing protein 2.
      
 0.504
ATF2
Cyclic AMP-dependent transcription factor ATF-2.
      
 0.501
BMPER
BMP-binding endothelial regulator protein.
      
 0.478
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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