Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPDZMultiple PDZ domain protein. (1967 aa)    
Predicted Functional Partners:
MPP5
MAGUK p55 subfamily member 5; Belongs to the MAGUK family.
   
 0.983
AMOT
Angiomotin.
    
 0.942
AMOTL1
Angiomotin-like protein 1.
    
 0.942
AMOTL2
Angiomotin-like protein 2.
   
 0.921
HTR2C
5-hydroxytryptamine receptor 2C.
    
 
 0.548
LURAP1L
Leucine rich adaptor protein 1-like.
      
 0.526
MPP7
MAGUK p55 subfamily member 7; Belongs to the MAGUK family.
   
 0.511
MPP3
Membrane palmitoylated protein 3.
   
 0.511
LOC110483333
Peripheral plasma membrane protein CASK-like.
   
 0.483
CASK_1
Peripheral plasma membrane protein CASK.
   
 0.483
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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