Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MEX3DRNA-binding protein MEX3D. (471 aa)    
Predicted Functional Partners:
CNOT7
CCR4-NOT transcription complex subunit 7.
   
 
 0.769
YWHAE
14-3-3 protein epsilon; Belongs to the 14-3-3 family.
    
   0.711
NUDCD1
NudC domain-containing protein 1.
    
   0.685
FAM214A
Protein FAM214A.
      
 0.679
MEX3B
RNA-binding protein MEX3B.
   
   0.642
MYCBP2
E3 ubiquitin-protein ligase MYCBP2.
    
 
 0.629
AP4E1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
    
 
 0.601
LMBRD2
LMBR1 domain-containing protein 2.
   
  
 0.596
RSL24D1
Putative ribosome biogenesis protein RLP24.
      
 0.577
RAB27A
Ras-related protein Rab-27A.
      
 0.576
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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