STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBD3Methyl-CpG-binding domain protein 3. (291 aa)    
Predicted Functional Partners:
RBBP4
Histone-binding protein RBBP4.
    
 0.877
RBBP7
Histone-binding protein RBBP7.
    
 0.815
HDAC2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.809
MTA2
Metastasis associated 1 family member 2.
   
 0.787
MTA1
Metastasis-associated protein MTA1.
   
 0.787
MTA3
Metastasis-associated protein MTA3.
   
 0.787
GATAD2A
Transcriptional repressor p66-alpha.
   
 0.766
ENSLSDP00000011424
annotation not available
   
 0.766
GATAD2B
Transcriptional repressor p66-beta.
   
 0.766
CHD5
Chromodomain-helicase-DNA-binding protein 5.
    
 0.730
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.