STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40APre-mRNA-processing factor 40 A. (950 aa)    
Predicted Functional Partners:
ENSLSDP00000024472
annotation not available
   
 0.893
RBM25
RNA-binding protein 25.
   
 0.893
SF1
Splicing factor 1.
   
 0.803
CCAR1
Cell division cycle and apoptosis regulator protein 1.
   
  0.787
RBM23
Putative RNA-binding protein 23.
   
  0.723
RBM39
RNA-binding protein 39.
   
  0.723
SF3A1
Splicing factor 3A subunit 1.
   
 
 0.723
TCERG1
Transcription elongation regulator 1.
   
0.723
HTT
Huntingtin.
    
 0.714
U2SURP
U2 snRNP-associated SURP motif-containing protein.
   
 
 0.708
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.