Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCF3Transcription factor E2-alpha. (667 aa)    
Predicted Functional Partners:
MYOD1
Myogenic factor.
    
 0.879
TAL1
T-cell acute lymphocytic leukemia protein 1.
    
 0.838
CTNNB1
Catenin beta-1.
    
 0.769
MYF6
Myogenic factor 6.
    
 0.722
ID4
DNA-binding protein inhibitor ID-4.
    
 
 0.720
MYOG
Myogenin.
    
 0.714
ID3
DNA-binding protein inhibitor ID-3-A.
    
 
 0.709
MYF5
Myogenic factor.
    
 0.703
ATOH1
Protein atonal 1.
    
 
 0.698
CREBBP
CREB-binding protein.
   
 0.682
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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