STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCHD1Structural maintenance of chromosomes flexible hinge domain-containing protein 1. (1981 aa)    
Predicted Functional Partners:
LRIF1
Ligand-dependent nuclear receptor-interacting factor 1.
    
 
 0.625
LOC110469891
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
      
 0.581
METTL4
Methyltransferase-like protein 4; Belongs to the MT-A70-like family.
   
  
 0.565
PDS5A
Sister chromatid cohesion protein PDS5 A.
   
  
 0.563
ENSLSDP00000016482
annotation not available
      
 0.523
MACROH2A1
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
      
 0.503
SCAF11
Protein SCAF11.
   
    0.480
NUP133
Nuclear pore complex protein Nup133.
   
  
 0.434
DMXL1
DmX-like protein 1.
   
    0.406
MBTD1
MBT domain-containing protein 1.
   
  
 0.406
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.